Variant report

Variant	rs7688666
Chromosome Location	chr4:160710661-160710662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10021956	1.00[EUR][1000 genomes]
rs10029579	1.00[EUR][1000 genomes]
rs10031028	1.00[EUR][1000 genomes]
rs10428306	1.00[AMR][1000 genomes]
rs10428387	1.00[AMR][1000 genomes]
rs13434862	1.00[EUR][1000 genomes]
rs1379602	1.00[EUR][1000 genomes]
rs1457816	1.00[EUR][1000 genomes]
rs17038523	1.00[EUR][1000 genomes]
rs17038579	1.00[EUR][1000 genomes]
rs17038629	1.00[EUR][1000 genomes]
rs17038867	1.00[AMR][1000 genomes]
rs2198987	1.00[AMR][1000 genomes]
rs2198988	1.00[AMR][1000 genomes]
rs2219400	1.00[AMR][1000 genomes]
rs28372545	1.00[AMR][1000 genomes]
rs28416067	1.00[EUR][1000 genomes]
rs28537283	1.00[EUR][1000 genomes]
rs28677878	1.00[AMR][1000 genomes]
rs28808952	1.00[EUR][1000 genomes]
rs28857244	1.00[EUR][1000 genomes]
rs28870485	1.00[EUR][1000 genomes]
rs4234929	1.00[EUR][1000 genomes]
rs55747993	1.00[EUR][1000 genomes]
rs55911637	1.00[EUR][1000 genomes]
rs56372042	1.00[EUR][1000 genomes]
rs56693065	1.00[EUR][1000 genomes]
rs57095996	1.00[EUR][1000 genomes]
rs57486354	1.00[EUR][1000 genomes]
rs58088795	1.00[EUR][1000 genomes]
rs59592744	1.00[EUR][1000 genomes]
rs59766829	1.00[EUR][1000 genomes]
rs60224043	1.00[EUR][1000 genomes]
rs60541977	1.00[EUR][1000 genomes]
rs6827726	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72971158	1.00[AMR][1000 genomes]
rs72971183	1.00[AMR][1000 genomes]
rs72972820	1.00[AMR][1000 genomes]
rs72972884	1.00[AMR][1000 genomes]
rs72972893	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72974934	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72974935	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72974937	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72974939	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72974941	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72976753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72976755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72976757	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72976758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72976762	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72976765	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72976768	0.82[ASN][1000 genomes]
rs72976771	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72978803	1.00[AMR][1000 genomes]
rs72978804	1.00[AMR][1000 genomes]
rs72978806	1.00[AMR][1000 genomes]
rs72978807	1.00[AMR][1000 genomes]
rs72982033	1.00[AMR][1000 genomes]
rs73858908	1.00[EUR][1000 genomes]
rs73858910	1.00[EUR][1000 genomes]
rs73858911	1.00[EUR][1000 genomes]
rs73858915	1.00[EUR][1000 genomes]
rs73858937	1.00[EUR][1000 genomes]
rs73858938	1.00[EUR][1000 genomes]
rs73858947	1.00[EUR][1000 genomes]
rs73858952	1.00[EUR][1000 genomes]
rs73862114	1.00[EUR][1000 genomes]
rs73862124	1.00[EUR][1000 genomes]
rs7667123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7670295	1.00[EUR][1000 genomes]
rs7688493	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688559	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7688749	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880358	chr4:160694415-161575183	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv595814	chr4:160705097-160834831	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv461696	chr4:160708061-160834831	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv595815	chr4:160708061-160834831	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160709200-160713400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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