Variant report

Variant	rs72971183
Chromosome Location	chr4:160674812-160674813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10009182	1.00[ASN][1000 genomes]
rs10428306	1.00[AMR][1000 genomes]
rs10428387	1.00[AMR][1000 genomes]
rs1457813	1.00[ASN][1000 genomes]
rs17038867	1.00[AMR][1000 genomes]
rs2198987	1.00[AMR][1000 genomes]
rs2198988	1.00[AMR][1000 genomes]
rs2219400	1.00[AMR][1000 genomes]
rs28372545	1.00[AMR][1000 genomes]
rs28677878	1.00[AMR][1000 genomes]
rs6827726	1.00[AMR][1000 genomes]
rs6847951	1.00[ASN][1000 genomes]
rs72971158	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72972820	1.00[AMR][1000 genomes]
rs72972884	1.00[AMR][1000 genomes]
rs72972893	1.00[AMR][1000 genomes]
rs72974928	1.00[AMR][1000 genomes]
rs72974934	1.00[AMR][1000 genomes]
rs72974935	1.00[AMR][1000 genomes]
rs72974937	1.00[AMR][1000 genomes]
rs72974939	1.00[AMR][1000 genomes]
rs72974941	1.00[AMR][1000 genomes]
rs72976753	1.00[AMR][1000 genomes]
rs72976755	1.00[AMR][1000 genomes]
rs72976757	1.00[AMR][1000 genomes]
rs72976758	1.00[AMR][1000 genomes]
rs72976762	1.00[AMR][1000 genomes]
rs72976765	1.00[AMR][1000 genomes]
rs72976771	1.00[AMR][1000 genomes]
rs72978803	1.00[AMR][1000 genomes]
rs72978804	1.00[AMR][1000 genomes]
rs72978806	1.00[AMR][1000 genomes]
rs72978807	1.00[AMR][1000 genomes]
rs72982033	1.00[AMR][1000 genomes]
rs7667123	1.00[AMR][1000 genomes]
rs7688493	1.00[AMR][1000 genomes]
rs7688559	1.00[AMR][1000 genomes]
rs7688666	1.00[AMR][1000 genomes]
rs7688749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160666600-160685400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:160669600-160676400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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