Variant report

Variant	rs28372545
Chromosome Location	chr4:160723825-160723826
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160716592..160718237-chr4:160722537..160724176,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10428306	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10428387	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038867	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17038880	0.93[AFR][1000 genomes]
rs17038889	0.93[AFR][1000 genomes]
rs17038891	0.88[AFR][1000 genomes]
rs2198987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2198988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2219400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28677878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62335364	0.85[AFR][1000 genomes]
rs6827726	1.00[AMR][1000 genomes]
rs72971158	1.00[AMR][1000 genomes]
rs72971183	1.00[AMR][1000 genomes]
rs72972820	1.00[AMR][1000 genomes]
rs72972884	1.00[AMR][1000 genomes]
rs72972893	1.00[AMR][1000 genomes]
rs72974928	1.00[AMR][1000 genomes]
rs72974934	1.00[AMR][1000 genomes]
rs72974935	1.00[AMR][1000 genomes]
rs72974937	1.00[AMR][1000 genomes]
rs72974939	1.00[AMR][1000 genomes]
rs72974941	1.00[AMR][1000 genomes]
rs72976753	1.00[AMR][1000 genomes]
rs72976755	1.00[AMR][1000 genomes]
rs72976757	1.00[AMR][1000 genomes]
rs72976758	1.00[AMR][1000 genomes]
rs72976762	1.00[AMR][1000 genomes]
rs72976765	1.00[AMR][1000 genomes]
rs72976771	1.00[AMR][1000 genomes]
rs72978803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72978820	0.93[AFR][1000 genomes]
rs72978830	0.86[AFR][1000 genomes]
rs72978853	0.86[AFR][1000 genomes]
rs72978855	0.86[AFR][1000 genomes]
rs72978857	0.86[AFR][1000 genomes]
rs72978858	0.86[AFR][1000 genomes]
rs72978861	0.86[AFR][1000 genomes]
rs72982033	1.00[AMR][1000 genomes]
rs7667123	1.00[AMR][1000 genomes]
rs7688493	1.00[AMR][1000 genomes]
rs7688559	1.00[AMR][1000 genomes]
rs7688666	1.00[AMR][1000 genomes]
rs7688749	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880358	chr4:160694415-161575183	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv595814	chr4:160705097-160834831	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv461696	chr4:160708061-160834831	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv595815	chr4:160708061-160834831	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029076	chr4:160716044-160841619	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160723400-160726600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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