Variant report

Variant	rs10009182
Chromosome Location	chr4:160669731-160669732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12498243	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1457812	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1457813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1457814	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2088980	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4690956	0.83[AMR][1000 genomes]
rs6816178	1.00[AMR][1000 genomes]
rs6847951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6849563	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971116	1.00[AMR][1000 genomes]
rs72971126	1.00[AMR][1000 genomes]
rs72971147	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971183	1.00[ASN][1000 genomes]
rs72982005	1.00[AMR][1000 genomes]
rs9307995	1.00[JPT][hapmap]
rs9685442	1.00[JPT][hapmap]
rs991840	0.87[AFR][1000 genomes]
rs9996003	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160666600-160685400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:160669400-160669800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:160669600-160676400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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