Variant report
| Variant | rs4690956 |
|---|---|
| Chromosome Location | chr4:160684694-160684695 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:160678721..160681437-chr4:160682967..160685832,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10009182 | 0.83[AMR][1000 genomes] |
| rs10517708 | 1.00[ASN][1000 genomes] |
| rs12498243 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1379604 | 1.00[ASN][1000 genomes] |
| rs1379605 | 1.00[ASN][1000 genomes] |
| rs1457812 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1457813 | 0.83[AMR][1000 genomes] |
| rs1457814 | 0.83[AMR][1000 genomes] |
| rs1902828 | 0.94[ASN][1000 genomes] |
| rs2088980 | 0.83[AMR][1000 genomes] |
| rs2348622 | 1.00[ASN][1000 genomes] |
| rs4596201 | 0.94[ASN][1000 genomes] |
| rs4691610 | 0.94[ASN][1000 genomes] |
| rs6816178 | 0.83[AMR][1000 genomes] |
| rs6847951 | 0.83[AMR][1000 genomes] |
| rs6849563 | 0.83[AMR][1000 genomes] |
| rs72971116 | 0.83[AMR][1000 genomes] |
| rs72971126 | 0.83[AMR][1000 genomes] |
| rs72971147 | 0.83[AMR][1000 genomes] |
| rs72982005 | 0.83[AMR][1000 genomes] |
| rs7675486 | 0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9307995 | 1.00[JPT][hapmap] |
| rs9685442 | 1.00[JPT][hapmap] |
| rs991839 | 1.00[ASN][1000 genomes] |
| rs991840 | 0.85[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9996003 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv4574 | chr4:160652259-160686024 | Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160666600-160685400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
