Variant report

Variant	rs1379604
Chromosome Location	chr4:160689563-160689564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10517708	1.00[ASN][1000 genomes]
rs12498243	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1379605	1.00[ASN][1000 genomes]
rs1457812	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1902828	0.94[ASN][1000 genomes]
rs2348622	1.00[ASN][1000 genomes]
rs4596201	0.94[ASN][1000 genomes]
rs4690956	1.00[ASN][1000 genomes]
rs4691610	0.94[ASN][1000 genomes]
rs7675486	1.00[ASN][1000 genomes]
rs9307995	1.00[JPT][hapmap]
rs9685442	1.00[JPT][hapmap]
rs991839	1.00[ASN][1000 genomes]
rs991840	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9996003	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160685200-160689800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:160685400-160689600	Enhancers	NH-A	brain
3	chr4:160686000-160691800	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:160686200-160692200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:160687400-160691400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:160688000-160689800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:160688200-160689800	Enhancers	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links