Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160678721..160681437-chr4:160682967..160685832,2	MCF-7	breast:
2	chr4:160685499..160686183-chr4:160832505..160833090,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10517708	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932325	1.00[EUR][1000 genomes]
rs11932978	0.95[EUR][1000 genomes]
rs11933231	1.00[EUR][1000 genomes]
rs11933830	1.00[EUR][1000 genomes]
rs11940086	1.00[EUR][1000 genomes]
rs11946735	1.00[EUR][1000 genomes]
rs12498243	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1379604	1.00[ASN][1000 genomes]
rs1379605	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457812	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17038730	0.95[EUR][1000 genomes]
rs1902828	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2348619	0.90[EUR][1000 genomes]
rs2348622	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4596201	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4690956	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4691610	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58629298	0.90[EUR][1000 genomes]
rs60159765	0.95[EUR][1000 genomes]
rs60600892	1.00[EUR][1000 genomes]
rs60614467	1.00[EUR][1000 genomes]
rs6814758	0.95[EUR][1000 genomes]
rs6816142	1.00[EUR][1000 genomes]
rs6823726	0.95[EUR][1000 genomes]
rs6827748	0.95[EUR][1000 genomes]
rs6840791	1.00[EUR][1000 genomes]
rs6855630	0.95[EUR][1000 genomes]
rs6855714	1.00[EUR][1000 genomes]
rs9307995	0.95[EUR][1000 genomes]
rs9684747	0.95[EUR][1000 genomes]
rs9685442	0.95[EUR][1000 genomes]
rs991839	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991840	1.00[ASN][1000 genomes]
rs9996003	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160685200-160687400	Enhancers	HSMM	muscle
2	chr4:160685200-160687600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:160685200-160689800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:160685400-160686000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:160685400-160686000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:160685400-160686000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:160685400-160686000	Enhancers	HSMMtube	muscle
8	chr4:160685400-160686200	Enhancers	Fetal Brain Male	brain
9	chr4:160685400-160689600	Enhancers	NH-A	brain
10	chr4:160685600-160686000	Enhancers	Colon Smooth Muscle	Colon
11	chr4:160685600-160687000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:160685800-160686000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:160685800-160686200	Enhancers	Rectal Smooth Muscle	rectum

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