Variant report

Variant	rs6816142
Chromosome Location	chr4:160660685-160660686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10517708	0.95[EUR][1000 genomes]
rs11932325	1.00[EUR][1000 genomes]
rs11932978	0.95[EUR][1000 genomes]
rs11933231	1.00[EUR][1000 genomes]
rs11933830	1.00[EUR][1000 genomes]
rs11940086	1.00[EUR][1000 genomes]
rs11946735	1.00[EUR][1000 genomes]
rs1379605	0.95[EUR][1000 genomes]
rs1457814	1.00[ASN][1000 genomes]
rs17038730	0.95[EUR][1000 genomes]
rs1902828	0.95[EUR][1000 genomes]
rs2088980	0.90[ASN][1000 genomes]
rs2348619	0.90[EUR][1000 genomes]
rs2348622	0.95[EUR][1000 genomes]
rs4596201	0.95[EUR][1000 genomes]
rs4691610	0.95[EUR][1000 genomes]
rs58629298	0.90[EUR][1000 genomes]
rs60159765	0.95[EUR][1000 genomes]
rs60600892	1.00[EUR][1000 genomes]
rs60614467	1.00[EUR][1000 genomes]
rs6814758	0.95[EUR][1000 genomes]
rs6823726	0.95[EUR][1000 genomes]
rs6827748	0.95[EUR][1000 genomes]
rs6840791	1.00[EUR][1000 genomes]
rs6849563	0.85[ASN][1000 genomes]
rs6855630	0.95[EUR][1000 genomes]
rs6855714	1.00[EUR][1000 genomes]
rs72971147	1.00[ASN][1000 genomes]
rs72971158	1.00[ASN][1000 genomes]
rs7675486	1.00[EUR][1000 genomes]
rs9307995	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9684747	0.95[EUR][1000 genomes]
rs9685442	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs991839	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160657000-160669200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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