Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10517708	0.95[EUR][1000 genomes]
rs11932325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11932978	0.95[EUR][1000 genomes]
rs11933231	1.00[EUR][1000 genomes]
rs11933830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1379605	0.95[EUR][1000 genomes]
rs17038730	0.95[EUR][1000 genomes]
rs1902828	0.95[EUR][1000 genomes]
rs2348619	0.90[EUR][1000 genomes]
rs2348622	0.95[EUR][1000 genomes]
rs4596201	0.95[EUR][1000 genomes]
rs4691610	0.95[EUR][1000 genomes]
rs58629298	0.90[EUR][1000 genomes]
rs60159765	0.95[EUR][1000 genomes]
rs60600892	1.00[EUR][1000 genomes]
rs60614467	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6814758	0.95[EUR][1000 genomes]
rs6816142	1.00[EUR][1000 genomes]
rs6823726	0.95[EUR][1000 genomes]
rs6827748	0.95[EUR][1000 genomes]
rs6840791	1.00[EUR][1000 genomes]
rs6855630	0.95[EUR][1000 genomes]
rs6855714	1.00[EUR][1000 genomes]
rs7675486	1.00[EUR][1000 genomes]
rs9307995	0.95[EUR][1000 genomes]
rs9684747	0.95[EUR][1000 genomes]
rs9685442	0.95[EUR][1000 genomes]
rs991839	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160685200-160687400	Enhancers	HSMM	muscle
2	chr4:160685200-160687600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:160685200-160689800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:160685400-160689600	Enhancers	NH-A	brain
5	chr4:160686000-160691800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:160686200-160692200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:160686400-160687400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:160687200-160687600	Enhancers	Fetal Brain Male	brain
9	chr4:160687200-160688000	Enhancers	HSMMtube	muscle

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