Variant report
| Variant | rs6855714 |
|---|---|
| Chromosome Location | chr4:160697891-160697892 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:160691798..160694142-chr4:160696155..160698727,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10517708 | 0.95[EUR][1000 genomes] |
| rs11932325 | 1.00[EUR][1000 genomes] |
| rs11932978 | 0.95[EUR][1000 genomes] |
| rs11933231 | 1.00[EUR][1000 genomes] |
| rs11933830 | 1.00[EUR][1000 genomes] |
| rs11940086 | 1.00[EUR][1000 genomes] |
| rs11946735 | 1.00[EUR][1000 genomes] |
| rs1379605 | 0.95[EUR][1000 genomes] |
| rs17038730 | 0.95[EUR][1000 genomes] |
| rs1902828 | 0.95[EUR][1000 genomes] |
| rs2348619 | 0.90[EUR][1000 genomes] |
| rs2348622 | 0.95[EUR][1000 genomes] |
| rs4596201 | 0.95[EUR][1000 genomes] |
| rs4691610 | 0.95[EUR][1000 genomes] |
| rs58629298 | 0.90[EUR][1000 genomes] |
| rs60159765 | 0.95[EUR][1000 genomes] |
| rs60600892 | 1.00[EUR][1000 genomes] |
| rs60614467 | 1.00[EUR][1000 genomes] |
| rs6814758 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6816142 | 1.00[EUR][1000 genomes] |
| rs6823726 | 0.95[EUR][1000 genomes] |
| rs6827748 | 0.95[EUR][1000 genomes] |
| rs6840791 | 1.00[EUR][1000 genomes] |
| rs6855630 | 0.95[EUR][1000 genomes] |
| rs7675486 | 1.00[EUR][1000 genomes] |
| rs9307995 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9684747 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9685442 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs991839 | 0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015469 | chr4:160389277-160841619 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv537316 | chr4:160389277-160841619 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv880358 | chr4:160694415-161575183 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160697600-160698400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
