Variant report

Variant	rs72971116
Chromosome Location	chr4:160626144-160626145
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10009182	1.00[AMR][1000 genomes]
rs12498243	0.83[AMR][1000 genomes]
rs1457812	0.83[AMR][1000 genomes]
rs1457813	1.00[AMR][1000 genomes]
rs1457814	1.00[AMR][1000 genomes]
rs2088980	1.00[AMR][1000 genomes]
rs4690956	0.83[AMR][1000 genomes]
rs6816178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847951	1.00[AMR][1000 genomes]
rs6849563	1.00[AMR][1000 genomes]
rs72971126	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72971147	1.00[AMR][1000 genomes]
rs72982005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9996003	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755953	chr4:160557413-160626250	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv595813	chr4:160574450-160665365	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160623800-160630400	Weak transcription	Pancreas	Pancrea
2	chr4:160624000-160627400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:160625600-160627800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:160625800-160627000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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