Variant report

Variant	rs73858947
Chromosome Location	chr4:160666911-160666912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf45-1	chr4:160666874-160666960	XLOC_004140

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10021956	1.00[EUR][1000 genomes]
rs10029579	1.00[EUR][1000 genomes]
rs10031028	1.00[EUR][1000 genomes]
rs13434862	1.00[EUR][1000 genomes]
rs1379602	1.00[EUR][1000 genomes]
rs1457816	1.00[EUR][1000 genomes]
rs17038406	1.00[EUR][1000 genomes]
rs17038435	1.00[EUR][1000 genomes]
rs17038443	1.00[EUR][1000 genomes]
rs17038479	1.00[EUR][1000 genomes]
rs17038490	1.00[EUR][1000 genomes]
rs17038523	1.00[EUR][1000 genomes]
rs17038579	1.00[EUR][1000 genomes]
rs17038629	1.00[EUR][1000 genomes]
rs28416067	1.00[EUR][1000 genomes]
rs28537283	1.00[EUR][1000 genomes]
rs28808952	1.00[EUR][1000 genomes]
rs28857244	1.00[EUR][1000 genomes]
rs28870485	1.00[EUR][1000 genomes]
rs4234929	1.00[EUR][1000 genomes]
rs4361339	1.00[EUR][1000 genomes]
rs55747993	1.00[EUR][1000 genomes]
rs55911637	1.00[EUR][1000 genomes]
rs56372042	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56693065	1.00[EUR][1000 genomes]
rs57095996	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57486354	1.00[EUR][1000 genomes]
rs58088795	1.00[EUR][1000 genomes]
rs58103883	1.00[EUR][1000 genomes]
rs59592744	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59766829	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60224043	1.00[EUR][1000 genomes]
rs60541977	1.00[EUR][1000 genomes]
rs6827726	1.00[EUR][1000 genomes]
rs72972893	1.00[EUR][1000 genomes]
rs72974928	1.00[EUR][1000 genomes]
rs72974934	1.00[EUR][1000 genomes]
rs72974935	1.00[EUR][1000 genomes]
rs72974937	1.00[EUR][1000 genomes]
rs72974939	1.00[EUR][1000 genomes]
rs72974941	1.00[EUR][1000 genomes]
rs72976753	1.00[EUR][1000 genomes]
rs72976755	1.00[EUR][1000 genomes]
rs72976757	1.00[EUR][1000 genomes]
rs72976758	1.00[EUR][1000 genomes]
rs72976762	1.00[EUR][1000 genomes]
rs72976765	1.00[EUR][1000 genomes]
rs72976771	1.00[EUR][1000 genomes]
rs73858908	1.00[EUR][1000 genomes]
rs73858910	1.00[EUR][1000 genomes]
rs73858911	1.00[EUR][1000 genomes]
rs73858915	1.00[EUR][1000 genomes]
rs73858937	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73858938	1.00[EUR][1000 genomes]
rs73858952	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73862114	1.00[EUR][1000 genomes]
rs73862124	1.00[EUR][1000 genomes]
rs7442223	1.00[EUR][1000 genomes]
rs7670295	1.00[EUR][1000 genomes]
rs7688493	1.00[EUR][1000 genomes]
rs7688559	1.00[EUR][1000 genomes]
rs7688666	1.00[EUR][1000 genomes]
rs7688749	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv4574	chr4:160652259-160686024	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160657000-160669200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:160666600-160685400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links