Variant report

Variant	rs17038479
Chromosome Location	chr4:160511342-160511343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160504532..160506427-chr4:160510879..160513741,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10021956	1.00[EUR][1000 genomes]
rs10031028	1.00[EUR][1000 genomes]
rs10517705	1.00[AMR][1000 genomes]
rs13434862	1.00[EUR][1000 genomes]
rs1502748	1.00[AMR][1000 genomes]
rs1604580	1.00[AMR][1000 genomes]
rs17038406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038435	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038523	1.00[EUR][1000 genomes]
rs17038579	1.00[EUR][1000 genomes]
rs17038582	1.00[AMR][1000 genomes]
rs17038629	1.00[EUR][1000 genomes]
rs28416067	1.00[EUR][1000 genomes]
rs28537283	1.00[EUR][1000 genomes]
rs28808952	1.00[EUR][1000 genomes]
rs28857244	1.00[EUR][1000 genomes]
rs28870485	1.00[EUR][1000 genomes]
rs4361339	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55747993	1.00[EUR][1000 genomes]
rs55911637	1.00[EUR][1000 genomes]
rs56372042	1.00[EUR][1000 genomes]
rs56693065	1.00[EUR][1000 genomes]
rs57095996	1.00[EUR][1000 genomes]
rs57486354	1.00[EUR][1000 genomes]
rs58088795	1.00[EUR][1000 genomes]
rs58103883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59592744	1.00[EUR][1000 genomes]
rs59766829	1.00[EUR][1000 genomes]
rs60224043	1.00[EUR][1000 genomes]
rs60541977	1.00[EUR][1000 genomes]
rs73858908	1.00[EUR][1000 genomes]
rs73858910	1.00[EUR][1000 genomes]
rs73858911	1.00[EUR][1000 genomes]
rs73858915	1.00[EUR][1000 genomes]
rs73858937	1.00[EUR][1000 genomes]
rs73858938	1.00[EUR][1000 genomes]
rs73858947	1.00[EUR][1000 genomes]
rs73858952	1.00[EUR][1000 genomes]
rs73862114	1.00[EUR][1000 genomes]
rs73862124	1.00[EUR][1000 genomes]
rs7442223	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508400-160513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160509200-160514200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:160510400-160513400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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