Variant report

Variant	rs7442223
Chromosome Location	chr4:160518520-160518521
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10021956	1.00[EUR][1000 genomes]
rs10031028	1.00[EUR][1000 genomes]
rs10517705	1.00[AMR][1000 genomes]
rs13434862	1.00[EUR][1000 genomes]
rs1502748	1.00[AMR][1000 genomes]
rs1604580	1.00[AMR][1000 genomes]
rs17038406	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038435	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038443	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038490	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038523	1.00[EUR][1000 genomes]
rs17038579	1.00[EUR][1000 genomes]
rs17038582	1.00[AMR][1000 genomes]
rs17038629	1.00[EUR][1000 genomes]
rs28416067	1.00[EUR][1000 genomes]
rs28537283	1.00[EUR][1000 genomes]
rs28808952	1.00[EUR][1000 genomes]
rs28857244	1.00[EUR][1000 genomes]
rs28870485	1.00[EUR][1000 genomes]
rs4361339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55747993	1.00[EUR][1000 genomes]
rs55911637	1.00[EUR][1000 genomes]
rs56372042	1.00[EUR][1000 genomes]
rs56693065	1.00[EUR][1000 genomes]
rs57095996	1.00[EUR][1000 genomes]
rs57486354	1.00[EUR][1000 genomes]
rs58088795	1.00[EUR][1000 genomes]
rs58103883	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59592744	1.00[EUR][1000 genomes]
rs59766829	1.00[EUR][1000 genomes]
rs60224043	1.00[EUR][1000 genomes]
rs60541977	1.00[EUR][1000 genomes]
rs72972893	1.00[EUR][1000 genomes]
rs73858908	1.00[EUR][1000 genomes]
rs73858910	1.00[EUR][1000 genomes]
rs73858911	1.00[EUR][1000 genomes]
rs73858915	1.00[EUR][1000 genomes]
rs73858937	1.00[EUR][1000 genomes]
rs73858938	1.00[EUR][1000 genomes]
rs73858947	1.00[EUR][1000 genomes]
rs73858952	1.00[EUR][1000 genomes]
rs73862114	1.00[EUR][1000 genomes]
rs73862124	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881205	chr4:160516090-160628006	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:160516000-160519200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:160516000-160519400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:160516200-160526800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:160516800-160518800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:160516800-160519200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:160516800-160520000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:160516800-160530000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:160517000-160518600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr4:160517400-160518800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:160517400-160518800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr4:160517400-160519200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:160517800-160519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:160518000-160519200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr4:160518200-160519200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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