Variant report

Variant	rs58940985
Chromosome Location	chr6:164210594-164210595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1111706	1.00[AMR][1000 genomes]
rs16895237	1.00[AMR][1000 genomes]
rs16895341	1.00[AMR][1000 genomes]
rs16895364	1.00[AMR][1000 genomes]
rs16895371	1.00[AMR][1000 genomes]
rs16895380	1.00[AMR][1000 genomes]
rs16895383	1.00[AMR][1000 genomes]
rs58088941	1.00[AMR][1000 genomes]
rs58323755	1.00[AMR][1000 genomes]
rs59310825	1.00[AMR][1000 genomes]
rs59525582	1.00[AMR][1000 genomes]
rs59978141	1.00[AMR][1000 genomes]
rs60789865	1.00[AMR][1000 genomes]
rs6455923	1.00[AMR][1000 genomes]
rs6455924	1.00[AMR][1000 genomes]
rs7744004	1.00[AMR][1000 genomes]
rs7744805	1.00[AMR][1000 genomes]
rs7757701	1.00[AMR][1000 genomes]
rs7775589	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164204000-164210600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:164208200-164210600	Enhancers	K562	blood
3	chr6:164208400-164211400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:164209200-164210800	Enhancers	Psoas Muscle	Psoas
5	chr6:164209200-164211600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:164209200-164212000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:164209400-164211600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:164210200-164210600	Enhancers	GM12878-XiMat	blood
9	chr6:164210200-164211200	Enhancers	HSMM	muscle
10	chr6:164210200-164211400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:164210200-164212000	Enhancers	Fetal Stomach	stomach
12	chr6:164210200-164212200	Enhancers	HSMMtube	muscle
13	chr6:164210400-164210600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:164210400-164211400	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:164210400-164212000	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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