Variant report

Variant	rs16895341
Chromosome Location	chr6:164237798-164237799
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164236261..164240051-chr6:164242043..164246264,3	K562	blood:
2	chr6:164230399..164232201-chr6:164236575..164239292,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1111706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895237	1.00[AMR][1000 genomes]
rs16895364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895397	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs16895830	1.00[AMR][1000 genomes]
rs58088941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58323755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58940985	1.00[AMR][1000 genomes]
rs59310825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59525582	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59978141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60789865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6455923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6455924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7744805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7752540	1.00[CEU][hapmap]
rs7757701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7775589	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv970710	chr6:164226049-164239768	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2762629	chr6:164237798-164239306	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16895341	ARHGAP25	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164230400-164249200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164232400-164241200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:164234800-164238000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:164236400-164238000	Weak transcription	NHDF-Ad	bronchial
5	chr6:164236400-164241600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:164236400-164241600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:164236400-164249000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:164236600-164241800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:164237600-164237800	Enhancers	Fetal Muscle Trunk	muscle

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