Variant report

Variant	rs16895830
Chromosome Location	chr6:164404984-164404985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16895341	1.00[AMR][1000 genomes]
rs16895364	1.00[AMR][1000 genomes]
rs16895371	1.00[AMR][1000 genomes]
rs16895380	1.00[AMR][1000 genomes]
rs16895383	1.00[AMR][1000 genomes]
rs58088941	1.00[AMR][1000 genomes]
rs58323755	1.00[AMR][1000 genomes]
rs59978141	1.00[AMR][1000 genomes]
rs60789865	1.00[AMR][1000 genomes]
rs6455923	1.00[AMR][1000 genomes]
rs6455924	1.00[AMR][1000 genomes]
rs7744004	1.00[AMR][1000 genomes]
rs7744805	1.00[AMR][1000 genomes]
rs7757701	1.00[AMR][1000 genomes]
rs7775589	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830858	chr6:164296054-164455743	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv5582	chr6:164390353-164405727	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164393800-164413800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164399000-164405400	Weak transcription	Pancreas	Pancrea
3	chr6:164404200-164405000	Active TSS	Brain Anterior Caudate	brain
4	chr6:164404200-164405000	Active TSS	Brain Substantia Nigra	brain
5	chr6:164404400-164405000	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:164404400-164405000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:164404400-164405000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:164404400-164405200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr6:164404400-164405200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr6:164404400-164405200	Flanking Active TSS	NH-A	brain
11	chr6:164404400-164405600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:164404600-164405000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:164404600-164405000	Active TSS	Brain Hippocampus Middle	brain
14	chr6:164404600-164405200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr6:164404600-164405200	Active TSS	Fetal Brain Female	brain
16	chr6:164404600-164405400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:164404600-164405400	Enhancers	Fetal Heart	heart
18	chr6:164404600-164405800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:164404600-164405800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:164404800-164405000	Flanking Active TSS	Fetal Brain Male	brain
21	chr6:164404800-164405200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr6:164404800-164405200	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr6:164404800-164406400	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:164404800-164406400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:164404800-164406600	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:164404800-164406800	Weak transcription	Ovary	ovary
27	chr6:164404800-164407000	Weak transcription	Left Ventricle	heart
28	chr6:164404800-164407000	Weak transcription	Right Atrium	heart

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