Variant report

Variant	rs589427
Chromosome Location	chr2:31872513-31872514
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:31871510..31874229-chr2:31876671..31879476,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12467911	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs12479192	0.80[ASN][1000 genomes]
rs1510917	0.82[ASN][1000 genomes]
rs2208532	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2268799	0.83[ASN][1000 genomes]
rs2300697	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2300699	0.80[EUR][1000 genomes]
rs2300701	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2754530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4952197	0.82[CHB][hapmap]
rs4952244	0.81[CEU][hapmap];0.85[JPT][hapmap]
rs499362	0.85[ASN][1000 genomes]
rs502139	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs522638	0.87[CHB][hapmap];0.81[JPT][hapmap];0.81[YRI][hapmap];0.83[EUR][1000 genomes]
rs523349	0.88[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.95[YRI][hapmap];0.90[EUR][1000 genomes]
rs524345	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs527112	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs539213	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs553464	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs559555	0.85[ASN][1000 genomes]
rs569320	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs599300	0.85[ASN][1000 genomes]
rs607294	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs608574	0.90[ASN][1000 genomes]
rs623419	0.88[ASN][1000 genomes]
rs632148	0.81[CEU][hapmap];0.87[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes]
rs6748639	0.81[ASN][1000 genomes]
rs676033	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs681482	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs682895	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs765138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs806645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31861000-31873600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links