Variant report

Variant	rs58945053
Chromosome Location	chr6:121475951-121475952
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12110608	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55877152	1.00[EUR][1000 genomes]
rs57681305	0.89[AFR][1000 genomes]
rs59243538	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6938708	1.00[EUR][1000 genomes]
rs73766690	0.89[AFR][1000 genomes]
rs73766699	0.84[AFR][1000 genomes]
rs73766702	0.89[AFR][1000 genomes]
rs73768905	0.89[AFR][1000 genomes]
rs73768941	1.00[EUR][1000 genomes]
rs73768942	1.00[EUR][1000 genomes]
rs7753679	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7759653	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv604572	chr6:121465011-121544876	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121463600-121476800	Weak transcription	Gastric	stomach
2	chr6:121469400-121477800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:121472600-121481600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:121473200-121476200	ZNF genes & repeats	Dnd41	blood
5	chr6:121473400-121480600	Weak transcription	Small Intestine	intestine
6	chr6:121473400-121499000	Weak transcription	Right Ventricle	heart
7	chr6:121473800-121476000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:121473800-121476400	ZNF genes & repeats	Liver	Liver
9	chr6:121474200-121476800	Strong transcription	Primary T cells from cord blood	blood
10	chr6:121474200-121478400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:121474200-121478600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:121474200-121479600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:121474200-121483400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:121474400-121476000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr6:121474400-121476600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr6:121474400-121478400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:121474400-121483200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:121474400-121483400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr6:121474600-121478000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:121474600-121478600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr6:121474600-121479000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:121474600-121479000	Weak transcription	HSMMtube	muscle
23	chr6:121474600-121481400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:121474600-121485200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:121474600-121508600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:121474800-121479000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr6:121474800-121484000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr6:121475000-121479000	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:121475000-121482400	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:121475200-121476000	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr6:121475200-121478000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:121475200-121481400	Weak transcription	Brain Germinal Matrix	brain
33	chr6:121475400-121476600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:121475400-121477000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:121475400-121478000	Weak transcription	Fetal Muscle Trunk	muscle
36	chr6:121475400-121478200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:121475400-121478400	Weak transcription	Primary B cells from peripheral blood	blood
38	chr6:121475400-121478600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:121475400-121478600	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:121475400-121479000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:121475400-121479400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:121475400-121480400	Weak transcription	Primary B cells from cord blood	blood
43	chr6:121475400-121483000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr6:121475600-121476000	Weak transcription	Fetal Stomach	stomach
45	chr6:121475600-121476200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:121475600-121476800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:121475600-121478200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:121475600-121478400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:121475600-121478400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:121475600-121478400	Weak transcription	Fetal Intestine Large	intestine

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