Variant report

Variant	rs57681305
Chromosome Location	chr6:121389196-121389197
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12110608	0.89[AFR][1000 genomes]
rs28449923	1.00[EUR][1000 genomes]
rs56682268	1.00[EUR][1000 genomes]
rs57850926	1.00[EUR][1000 genomes]
rs58192637	1.00[EUR][1000 genomes]
rs58654967	1.00[EUR][1000 genomes]
rs58945053	0.89[AFR][1000 genomes]
rs59243538	0.85[AFR][1000 genomes]
rs61142512	1.00[EUR][1000 genomes]
rs6909278	1.00[EUR][1000 genomes]
rs73766636	0.86[AFR][1000 genomes]
rs73766686	1.00[EUR][1000 genomes]
rs73766689	1.00[EUR][1000 genomes]
rs73766690	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73766692	1.00[EUR][1000 genomes]
rs73766699	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73766700	1.00[EUR][1000 genomes]
rs73766702	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73768905	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73768907	1.00[EUR][1000 genomes]
rs73768908	1.00[EUR][1000 genomes]
rs73768909	1.00[EUR][1000 genomes]
rs73768911	1.00[EUR][1000 genomes]
rs73768913	1.00[EUR][1000 genomes]
rs73768914	1.00[EUR][1000 genomes]
rs73768916	1.00[EUR][1000 genomes]
rs73768927	1.00[EUR][1000 genomes]
rs73768929	1.00[EUR][1000 genomes]
rs73768930	1.00[EUR][1000 genomes]
rs73768941	0.84[AFR][1000 genomes]
rs73768942	0.83[AFR][1000 genomes]
rs7753679	0.85[AFR][1000 genomes]
rs7756842	1.00[EUR][1000 genomes]
rs7759653	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv886591	chr6:121260089-121398535	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886592	chr6:121260089-121425387	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv464037	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604571	chr6:121261915-121400981	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv886593	chr6:121362591-121414770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121386400-121390200	Weak transcription	Aorta	Aorta
2	chr6:121386800-121390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:121388000-121390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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