Variant report

Variant	rs73768914
Chromosome Location	chr6:121444621-121444622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs28449923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55877152	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56682268	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57681305	1.00[EUR][1000 genomes]
rs57850926	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58192637	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58654967	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61142512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6909278	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73766686	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766690	1.00[EUR][1000 genomes]
rs73766692	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766699	1.00[EUR][1000 genomes]
rs73766700	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73766702	1.00[EUR][1000 genomes]
rs73768905	1.00[EUR][1000 genomes]
rs73768907	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768908	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768909	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768915	1.00[AFR][1000 genomes]
rs73768916	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768927	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768929	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73768930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7756842	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv1812259	chr6:121404112-121451095	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121418600-121446200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:121419800-121446200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:121426600-121445200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:121429600-121455600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:121433000-121445200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:121433800-121446200	Weak transcription	Pancreas	Pancrea
7	chr6:121436400-121445600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:121436600-121445400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:121438400-121446200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:121441200-121446200	Weak transcription	HSMM	muscle
11	chr6:121441600-121445200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:121441800-121447600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:121442000-121446200	Weak transcription	Adipose Nuclei	Adipose
14	chr6:121442000-121446400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:121442000-121447600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:121442400-121446200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:121442600-121445200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:121442600-121446200	Weak transcription	Esophagus	oesophagus
19	chr6:121442600-121446200	Weak transcription	Placenta	Placenta
20	chr6:121443000-121446200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr6:121443400-121447800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:121443800-121447200	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr6:121444000-121444800	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:121444000-121445000	Strong transcription	Fetal Lung	lung
25	chr6:121444000-121445600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:121444000-121445600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr6:121444000-121447200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr6:121444000-121447200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:121444000-121448200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:121444200-121446200	Weak transcription	Left Ventricle	heart
31	chr6:121444200-121446200	Weak transcription	Ovary	ovary
32	chr6:121444400-121446800	Weak transcription	Fetal Heart	heart
33	chr6:121444600-121445000	Weak transcription	Primary T cells from cord blood	blood
34	chr6:121444600-121445200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:121444600-121445200	Weak transcription	Dnd41	blood
36	chr6:121444600-121446200	Weak transcription	Primary B cells from cord blood	blood
37	chr6:121444600-121446200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:121444600-121446200	Weak transcription	Fetal Muscle Trunk	muscle
39	chr6:121444600-121446200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:121444600-121446200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr6:121444600-121446800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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