Variant report

Variant rs58948242
Chromosome Location chr19:19986570-19986571
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:19977600-19995600 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
2 chr19:19977600-20006800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr19:19977800-19993200 Weak transcription Spleen Spleen
4 chr19:19978200-19993600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
5 chr19:19978400-19990800 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr19:19978600-19989000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr19:19978600-19991000 Weak transcription Muscle Satellite Cultured Cells --
8 chr19:19978600-19992400 Weak transcription Placenta Amnion Placenta Amnion
9 chr19:19978600-19995200 Weak transcription Pancreas Pancrea
10 chr19:19978600-19996800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr19:19978600-19999000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
12 chr19:19978600-19999000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr19:19978600-19999000 Weak transcription Right Ventricle heart
14 chr19:19978800-20007600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
15 chr19:19979000-20004000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
16 chr19:19979200-19988600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
17 chr19:19979200-20007400 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
18 chr19:19979400-19990800 Weak transcription Adipose Nuclei Adipose
19 chr19:19979400-19996400 Weak transcription Brain Inferior Temporal Lobe brain
20 chr19:19979400-19996800 Weak transcription Brain Substantia Nigra brain
21 chr19:19979400-20008200 ZNF genes & repeats Liver Liver
22 chr19:19979600-19990800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
23 chr19:19979600-19991200 Weak transcription Stomach Smooth Muscle stomach
24 chr19:19979600-19992800 Weak transcription Brain Angular Gyrus brain
25 chr19:19979600-19992800 Weak transcription Rectal Smooth Muscle rectum
26 chr19:19979600-19996800 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr19:19980000-19986800 Weak transcription Colon Smooth Muscle Colon
28 chr19:19980000-19987600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
29 chr19:19980000-19991200 Weak transcription Brain Hippocampus Middle brain
30 chr19:19980200-19990800 Weak transcription Brain Cingulate Gyrus brain
31 chr19:19980200-20001000 Weak transcription Fetal Heart heart
32 chr19:19981000-19995800 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
33 chr19:19982000-19987800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr19:19982000-19995000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
35 chr19:19982000-19995600 ZNF genes & repeats Fetal Brain Female brain
36 chr19:19982000-19995800 ZNF genes & repeats Primary hematopoietic stem cells blood
37 chr19:19982400-19992200 Weak transcription H9 Cell Line embryonic stem cell
38 chr19:19982400-20000200 Weak transcription Gastric stomach
39 chr19:19982600-19993000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
40 chr19:19983000-19990800 Weak transcription Breast Myoepithelial Primary Cells Breast
41 chr19:19983000-19993400 Weak transcription Osteobl bone
42 chr19:19983200-19987200 Weak transcription Psoas Muscle Psoas
43 chr19:19983200-19988600 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr19:19983200-19990200 Weak transcription Skeletal Muscle Male skeletal muscle
45 chr19:19983200-19990800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
46 chr19:19983200-19996600 Weak transcription Brain Anterior Caudate brain
47 chr19:19983800-19989600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr19:19984000-19993000 Weak transcription HSMM muscle
49 chr19:19984200-19991400 ZNF genes & repeats Primary B cells from cord blood blood
50 chr19:19984200-19999400 Weak transcription Primary T killer memory cells from peripheral blood blood

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