Variant report

Variant	rs58951455
Chromosome Location	chr4:47484493-47484494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr4:47484427-47484735	GM12878	blood:	n/a	chr4:47484565-47484576 chr4:47484566-47484576 chr4:47484601-47484612
2	FOS	chr4:47484398-47484755	HUVEC	blood vessel:	n/a	chr4:47484603-47484614 chr4:47484522-47484534
3	CEBPB	chr4:47484379-47484798	IMR90	lung:	n/a	n/a
4	NFIC	chr4:47484317-47484867	GM12878	blood:	n/a	n/a
5	RUNX3	chr4:47484364-47484739	GM12878	blood:	n/a	n/a
6	FOS	chr4:47484387-47484812	MCF10A-Er-Src	breast:	n/a	chr4:47484603-47484614 chr4:47484522-47484534
7	BATF	chr4:47484414-47484698	GM12878	blood:	n/a	chr4:47484565-47484576 chr4:47484566-47484576 chr4:47484601-47484612
8	MYC	chr4:47484487-47484838	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr4:47484486-47484841	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr4:47484452-47484652	MCF10A-Er-Src	breast:	n/a	n/a
11	RUNX3	chr4:47484412-47484743	GM12878	blood:	n/a	n/a
12	SPI1	chr4:47484350-47484555	HL-60	blood:	n/a	n/a
13	SPI1	chr4:47483809-47484668	HL-60	blood:	n/a	n/a
14	FOS	chr4:47484414-47484782	MCF10A-Er-Src	breast:	n/a	chr4:47484603-47484614 chr4:47484522-47484534
15	FOS	chr4:47484411-47484788	MCF10A-Er-Src	breast:	n/a	chr4:47484603-47484614 chr4:47484522-47484534
16	FOS	chr4:47484380-47484825	MCF10A-Er-Src	breast:	n/a	chr4:47484603-47484614 chr4:47484522-47484534

Variant related genes	Relation type
ATP10D	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10021832	0.85[ASN][1000 genomes]
rs12643603	0.85[ASN][1000 genomes]
rs35760816	0.80[ASN][1000 genomes]
rs4420957	0.85[ASN][1000 genomes]
rs4438736	0.85[ASN][1000 genomes]
rs4508853	0.85[ASN][1000 genomes]
rs4571306	0.85[ASN][1000 genomes]
rs4577551	0.85[ASN][1000 genomes]
rs6823873	0.85[ASN][1000 genomes]
rs6844173	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv282846	chr4:47484491-47484496	Enhancers Weak transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47471200-47487000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:47476600-47485800	Weak transcription	Placenta	Placenta
3	chr4:47481000-47487000	Weak transcription	Esophagus	oesophagus
4	chr4:47481200-47486400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:47483200-47484800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr4:47483200-47484800	Enhancers	GM12878-XiMat	blood
7	chr4:47483600-47485200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:47483800-47484600	Enhancers	Primary B cells from peripheral blood	blood
9	chr4:47483800-47484800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr4:47484000-47484600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:47484000-47484800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr4:47484000-47484800	Enhancers	HMEC	breast
13	chr4:47484000-47484800	Enhancers	NH-A	brain
14	chr4:47484000-47484800	Enhancers	NHLF	lung
15	chr4:47484000-47485000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:47484000-47485000	Enhancers	Osteobl	bone
17	chr4:47484000-47485200	Enhancers	HSMM	muscle
18	chr4:47484000-47485200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr4:47484000-47485800	Enhancers	NHEK	skin
20	chr4:47484000-47486000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:47484000-47486600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:47484000-47487200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:47484200-47484600	Enhancers	HUVEC	blood vessel
24	chr4:47484200-47484800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:47484200-47485000	Enhancers	Primary B cells from cord blood	blood

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