Variant report

Variant	rs58960287
Chromosome Location	chr5:79506822-79506823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79505099..79507881-chr5:79550530..79552076,3	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58577509	1.00[AMR][1000 genomes]
rs58793514	1.00[AMR][1000 genomes]
rs73129756	1.00[AMR][1000 genomes]
rs73129769	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79490800-79513800	Weak transcription	Fetal Kidney	kidney
2	chr5:79495200-79507800	Weak transcription	Right Ventricle	heart
3	chr5:79497000-79508800	Enhancers	Brain Substantia Nigra	brain
4	chr5:79497400-79515000	Weak transcription	Esophagus	oesophagus
5	chr5:79497800-79508400	Weak transcription	Primary B cells from peripheral blood	blood
6	chr5:79498600-79520800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:79498600-79521200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr5:79498800-79509800	Enhancers	Brain Hippocampus Middle	brain
9	chr5:79498800-79514000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr5:79499000-79507800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr5:79499000-79509200	Weak transcription	Spleen	Spleen
12	chr5:79499000-79513200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:79499000-79517800	Weak transcription	Aorta	Aorta
14	chr5:79499400-79507000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:79500000-79509200	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:79500000-79509400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr5:79500200-79512000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr5:79500400-79508200	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:79500400-79510400	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr5:79501000-79508000	Enhancers	Brain Anterior Caudate	brain
22	chr5:79501000-79509200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:79501000-79510600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr5:79501000-79512000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr5:79501000-79513200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr5:79501200-79507800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr5:79501200-79508400	Enhancers	Brain Cingulate Gyrus	brain
28	chr5:79501400-79507000	Weak transcription	Small Intestine	intestine
29	chr5:79501400-79507600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:79501400-79507600	Weak transcription	Colonic Mucosa	Colon
31	chr5:79501400-79507800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr5:79501400-79509200	Weak transcription	Primary B cells from cord blood	blood
33	chr5:79501400-79509200	Weak transcription	Right Atrium	heart
34	chr5:79501400-79509400	Weak transcription	NHEK	skin
35	chr5:79501400-79515000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr5:79501600-79513200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr5:79501600-79516800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:79502000-79516200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:79502200-79508000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr5:79502400-79513200	Weak transcription	Fetal Lung	lung
41	chr5:79502600-79508000	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr5:79502600-79509200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr5:79502600-79515200	Weak transcription	HSMMtube	muscle
44	chr5:79502800-79507200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:79502800-79507200	Weak transcription	Fetal Intestine Large	intestine
46	chr5:79502800-79509200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr5:79502800-79511400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr5:79502800-79513200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr5:79503200-79510800	Weak transcription	Placenta	Placenta
50	chr5:79503600-79513000	Weak transcription	Osteobl	bone

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