Variant report

Variant	rs73129756
Chromosome Location	chr5:79527086-79527087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79525784..79527475-chr5:79541554..79543864,2	MCF-7	breast:
2	chr5:79525266..79527458-chr5:79551276..79552910,2	MCF-7	breast:
3	chr5:79513562..79515155-chr5:79525546..79527318,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58577509	1.00[AMR][1000 genomes]
rs58793514	1.00[AMR][1000 genomes]
rs58960287	1.00[AMR][1000 genomes]
rs73129769	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79500000-79537600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:79509800-79535600	Weak transcription	Primary B cells from cord blood	blood
3	chr5:79512000-79534000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:79513800-79527800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr5:79515600-79534400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:79516800-79534400	Weak transcription	Right Ventricle	heart
7	chr5:79517000-79530000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr5:79517000-79532000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:79517000-79534200	Weak transcription	Fetal Stomach	stomach
10	chr5:79517000-79534800	Weak transcription	Dnd41	blood
11	chr5:79517000-79536400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr5:79517000-79536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:79517200-79533200	Weak transcription	Fetal Muscle Leg	muscle
14	chr5:79520400-79531000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr5:79521200-79532600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:79521400-79536200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr5:79521600-79534200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:79522000-79530200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr5:79523400-79530000	Weak transcription	Thymus	Thymus
20	chr5:79523600-79527800	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr5:79524200-79527800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr5:79524200-79527800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:79525200-79527400	Enhancers	Fetal Intestine Large	intestine
24	chr5:79525200-79527600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:79525200-79527600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr5:79525200-79527800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr5:79525200-79528400	Enhancers	Liver	Liver
28	chr5:79525200-79528400	Enhancers	Osteobl	bone
29	chr5:79525200-79528800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr5:79525400-79527400	Enhancers	Colon Smooth Muscle	Colon
31	chr5:79525400-79527800	Enhancers	Brain Cingulate Gyrus	brain
32	chr5:79525600-79527200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr5:79525600-79527600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr5:79525600-79527600	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr5:79525600-79527600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr5:79525600-79527800	Enhancers	Brain Hippocampus Middle	brain
37	chr5:79525600-79527800	Enhancers	Brain Substantia Nigra	brain
38	chr5:79525600-79527800	Enhancers	NH-A	brain
39	chr5:79525600-79528000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:79525800-79527600	Enhancers	A549	lung
41	chr5:79525800-79527800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr5:79525800-79530000	Weak transcription	Fetal Heart	heart
43	chr5:79525800-79530200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:79525800-79534200	Weak transcription	Fetal Kidney	kidney
45	chr5:79525800-79535400	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr5:79526000-79527800	Enhancers	Brain Germinal Matrix	brain
47	chr5:79526000-79530000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr5:79526000-79530000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:79526000-79534000	Weak transcription	Fetal Thymus	thymus
50	chr5:79526000-79534200	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links