Variant report

Variant	rs58981335
Chromosome Location	chr4:56207217-56207218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs59186730	1.00[AFR][1000 genomes]
rs6814943	0.92[AFR][1000 genomes]
rs73149706	1.00[AFR][1000 genomes]
rs73149708	1.00[AFR][1000 genomes]
rs73149712	1.00[AFR][1000 genomes]
rs73149715	1.00[AFR][1000 genomes]
rs7656431	0.96[AFR][1000 genomes]
rs7681974	0.91[AFR][1000 genomes]
rs7691585	0.86[AFR][1000 genomes]
rs7694736	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56203600-56210400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:56205800-56207800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:56205800-56208200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:56206200-56211800	Weak transcription	Adipose Nuclei	Adipose
5	chr4:56206400-56207600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:56206600-56207600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:56206600-56211200	Weak transcription	Stomach Mucosa	stomach
8	chr4:56206800-56211200	Weak transcription	Fetal Intestine Small	intestine
9	chr4:56206800-56211600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:56207000-56211200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links