Variant report

Variant	rs73149715
Chromosome Location	chr4:56210833-56210834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr4:56210510-56210991	MCF-7	breast:	n/a	n/a
2	GATA3	chr4:56210578-56210850	T-47D	breast:	n/a	n/a
3	GATA3	chr4:56210522-56210869	T-47D	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56209954..56216628-chr4:56219638..56226284,12	MCF-7	breast:
2	chr4:56207398..56211252-chr4:56263231..56266943,4	K562	blood:
3	chr4:56209741..56214746-chr4:56246986..56251789,8	K562	blood:
4	chr4:56210683..56216526-chr4:56216680..56221548,10	K562	blood:
5	chr4:56210761..56214527-chr4:56265668..56271169,8	K562	blood:

No data

No data

No data

Variant related genes	Relation type
SRD5A3	TF binding region
ENSG00000249700	Chromatin interaction
ENSG00000134851	Chromatin interaction
ENSG00000128039	Chromatin interaction
ENSG00000251111	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs58981335	1.00[AFR][1000 genomes]
rs59186730	1.00[AFR][1000 genomes]
rs6814943	0.92[AFR][1000 genomes]
rs73149706	1.00[AFR][1000 genomes]
rs73149708	1.00[AFR][1000 genomes]
rs73149712	1.00[AFR][1000 genomes]
rs7656431	0.96[AFR][1000 genomes]
rs7681974	0.91[AFR][1000 genomes]
rs7691585	0.86[AFR][1000 genomes]
rs7694736	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56206200-56211800	Weak transcription	Adipose Nuclei	Adipose
2	chr4:56206600-56211200	Weak transcription	Stomach Mucosa	stomach
3	chr4:56206800-56211200	Weak transcription	Fetal Intestine Small	intestine
4	chr4:56206800-56211600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:56207000-56211200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:56207600-56211800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:56207800-56211800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:56208200-56211800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:56208200-56211800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:56209000-56212000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:56210400-56211800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:56210600-56211200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:56210600-56211200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:56210600-56211200	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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