Variant report

Variant	rs59001523
Chromosome Location	chr1:98678076-98678077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17117528	1.00[AMR][1000 genomes]
rs59190413	1.00[AFR][1000 genomes]
rs59429666	1.00[AMR][1000 genomes]
rs60366086	1.00[AMR][1000 genomes]
rs60945684	1.00[AMR][1000 genomes]
rs61234261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61469147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74106050	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74106053	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107155	1.00[AMR][1000 genomes]
rs74107323	1.00[AMR][1000 genomes]
rs74107328	1.00[AMR][1000 genomes]
rs74107329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74107333	1.00[AMR][1000 genomes]
rs74107505	1.00[AFR][1000 genomes]
rs74110321	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1010393	chr1:98643684-98698557	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98676000-98685400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:98677200-98682800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:98677400-98681200	Weak transcription	HSMM	muscle
4	chr1:98677400-98681800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr1:98677400-98685600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:98677400-98685800	Weak transcription	NHLF	lung
7	chr1:98677400-98687200	Weak transcription	NHEK	skin
8	chr1:98677600-98683200	Weak transcription	A549	lung
9	chr1:98677800-98683000	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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