Variant report

Variant	rs60945684
Chromosome Location	chr1:98616834-98616835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17117438	1.00[EUR][1000 genomes]
rs17117480	1.00[EUR][1000 genomes]
rs17117486	1.00[EUR][1000 genomes]
rs17117488	1.00[EUR][1000 genomes]
rs17117490	1.00[EUR][1000 genomes]
rs17117528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4351683	1.00[EUR][1000 genomes]
rs4592283	1.00[EUR][1000 genomes]
rs55989986	1.00[EUR][1000 genomes]
rs57177728	1.00[EUR][1000 genomes]
rs57429463	1.00[EUR][1000 genomes]
rs57957567	1.00[EUR][1000 genomes]
rs58260707	1.00[EUR][1000 genomes]
rs58615096	1.00[EUR][1000 genomes]
rs59001523	1.00[AMR][1000 genomes]
rs59190413	1.00[EUR][1000 genomes]
rs59429666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60366086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60589486	1.00[EUR][1000 genomes]
rs61234261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61469147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106015	1.00[EUR][1000 genomes]
rs74106050	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106053	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74106056	1.00[EUR][1000 genomes]
rs74106140	1.00[EUR][1000 genomes]
rs74107135	1.00[EUR][1000 genomes]
rs74107155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107325	1.00[EUR][1000 genomes]
rs74107328	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74107505	1.00[EUR][1000 genomes]
rs74107506	1.00[EUR][1000 genomes]
rs74107508	1.00[EUR][1000 genomes]
rs74107510	1.00[EUR][1000 genomes]
rs74108221	1.00[EUR][1000 genomes]
rs74110320	1.00[EUR][1000 genomes]
rs74110321	1.00[EUR][1000 genomes]
rs74110322	1.00[EUR][1000 genomes]
rs7511752	1.00[EUR][1000 genomes]
rs7520550	1.00[EUR][1000 genomes]
rs9324376	1.00[EUR][1000 genomes]
rs9324377	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv830736	chr1:98488491-98663726	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv823631	chr1:98554257-98687985	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv462583	chr1:98554409-98645213	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv546875	chr1:98554409-98645213	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1007861	chr1:98601247-98632963	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3453357	chr1:98616780-98616837	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98615800-98636200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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