Variant report

Variant	rs74107510
Chromosome Location	chr1:98742903-98742904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17117528	1.00[EUR][1000 genomes]
rs57177728	1.00[EUR][1000 genomes]
rs59190413	1.00[EUR][1000 genomes]
rs60366086	1.00[EUR][1000 genomes]
rs60589486	1.00[EUR][1000 genomes]
rs60945684	1.00[EUR][1000 genomes]
rs61234261	1.00[EUR][1000 genomes]
rs61469147	1.00[EUR][1000 genomes]
rs74106050	1.00[EUR][1000 genomes]
rs74106053	1.00[EUR][1000 genomes]
rs74106056	1.00[EUR][1000 genomes]
rs74107135	1.00[EUR][1000 genomes]
rs74107155	1.00[EUR][1000 genomes]
rs74107323	1.00[EUR][1000 genomes]
rs74107325	1.00[EUR][1000 genomes]
rs74107328	1.00[EUR][1000 genomes]
rs74107329	1.00[EUR][1000 genomes]
rs74107330	1.00[EUR][1000 genomes]
rs74107332	1.00[EUR][1000 genomes]
rs74107333	1.00[EUR][1000 genomes]
rs74107505	1.00[EUR][1000 genomes]
rs74107506	1.00[EUR][1000 genomes]
rs74107508	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74110320	1.00[EUR][1000 genomes]
rs74110321	1.00[EUR][1000 genomes]
rs74110322	1.00[EUR][1000 genomes]
rs7511752	1.00[EUR][1000 genomes]
rs7520550	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv870541	chr1:98689392-98796509	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv998403	chr1:98706893-98804901	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv871969	chr1:98712294-98774883	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98738400-98745800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr1:98741400-98744200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:98741600-98743200	Enhancers	A549	lung
4	chr1:98741600-98744200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:98741600-98744200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:98741600-98745600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:98741800-98743800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr1:98741800-98744000	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:98741800-98745800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:98742200-98743800	Enhancers	HSMMtube	muscle
11	chr1:98742200-98744000	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:98742400-98743400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr1:98742400-98749000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:98742600-98743000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:98742600-98743200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:98742600-98743200	Enhancers	HSMM	muscle
17	chr1:98742600-98743200	Enhancers	NH-A	brain
18	chr1:98742600-98743400	Enhancers	Osteobl	bone
19	chr1:98742600-98743600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:98742600-98743800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:98742600-98744400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr1:98742800-98743800	Enhancers	NHDF-Ad	bronchial
23	chr1:98742800-98745800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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