Variant report

Variant	rs57177728
Chromosome Location	chr1:98710616-98710617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs17117480	1.00[EUR][1000 genomes]
rs17117486	1.00[EUR][1000 genomes]
rs17117488	1.00[EUR][1000 genomes]
rs17117490	1.00[EUR][1000 genomes]
rs17117528	1.00[EUR][1000 genomes]
rs58260707	1.00[EUR][1000 genomes]
rs59190413	1.00[EUR][1000 genomes]
rs60366086	1.00[EUR][1000 genomes]
rs60589486	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60945684	1.00[EUR][1000 genomes]
rs61234261	1.00[EUR][1000 genomes]
rs61469147	1.00[EUR][1000 genomes]
rs74106015	1.00[EUR][1000 genomes]
rs74106050	1.00[EUR][1000 genomes]
rs74106053	1.00[EUR][1000 genomes]
rs74106056	1.00[EUR][1000 genomes]
rs74106140	1.00[EUR][1000 genomes]
rs74107135	1.00[EUR][1000 genomes]
rs74107155	1.00[EUR][1000 genomes]
rs74107323	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74107325	1.00[EUR][1000 genomes]
rs74107328	1.00[EUR][1000 genomes]
rs74107329	1.00[EUR][1000 genomes]
rs74107330	1.00[EUR][1000 genomes]
rs74107332	1.00[EUR][1000 genomes]
rs74107333	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74107505	1.00[EUR][1000 genomes]
rs74107506	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74107508	1.00[EUR][1000 genomes]
rs74107510	1.00[EUR][1000 genomes]
rs74110320	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74110321	1.00[EUR][1000 genomes]
rs74110322	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7511752	1.00[EUR][1000 genomes]
rs7520550	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012958	chr1:98081528-98864746	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv870541	chr1:98689392-98796509	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv998403	chr1:98706893-98804901	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:98702200-98722200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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