Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12545937	0.87[ASN][1000 genomes]
rs1517129	0.87[ASN][1000 genomes]
rs1517130	0.87[ASN][1000 genomes]
rs16919092	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16934487	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs16934503	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934507	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16934510	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2255882	0.87[ASN][1000 genomes]
rs2591019	0.87[ASN][1000 genomes]
rs2591020	0.87[ASN][1000 genomes]
rs2676648	0.91[ASN][1000 genomes]
rs2676649	0.87[ASN][1000 genomes]
rs2676650	0.87[ASN][1000 genomes]
rs2676652	0.87[ASN][1000 genomes]
rs2676654	0.87[ASN][1000 genomes]
rs2676656	0.87[ASN][1000 genomes]
rs28675167	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57684550	1.00[EUR][1000 genomes]
rs58947046	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59670612	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61152394	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1031040	chr8:69265471-69315554	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv508512	chr8:69268794-69324532	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69270800-69273400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:69270800-69291600	Weak transcription	Aorta	Aorta
3	chr8:69271200-69272400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:69271600-69272000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:69271600-69272000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:69271600-69272200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr8:69271600-69272400	Enhancers	HUES64 Cell Line	embryonic stem cell

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