Variant report

Variant	rs61152394
Chromosome Location	chr8:69247469-69247470
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12545937	0.86[ASN][1000 genomes]
rs1517129	0.86[ASN][1000 genomes]
rs1517130	0.86[ASN][1000 genomes]
rs16919092	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16934487	0.91[ASN][1000 genomes]
rs16934503	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16934507	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16934510	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2255882	0.86[ASN][1000 genomes]
rs2591019	0.86[ASN][1000 genomes]
rs2591020	0.86[ASN][1000 genomes]
rs2676648	0.86[ASN][1000 genomes]
rs2676649	0.86[ASN][1000 genomes]
rs2676650	0.86[ASN][1000 genomes]
rs2676652	0.86[ASN][1000 genomes]
rs2676654	0.86[ASN][1000 genomes]
rs2676656	0.86[ASN][1000 genomes]
rs28675167	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57684550	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58947046	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59003086	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59670612	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028889	chr8:69026806-69308725	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv948687	chr8:69041121-69642540	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv890979	chr8:69176154-69252417	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890980	chr8:69181681-69252417	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69245400-69249000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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