Variant report

Variant	rs59016569
Chromosome Location	chr15:57020873-57020874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57020804..57022537-chr15:57050461..57051962,2	MCF-7	breast:
2	chr15:56782685..56785505-chr15:57019755..57021681,2	K562	blood:
3	chr15:57005760..57007990-chr15:57020400..57022198,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55658557	0.89[AFR][1000 genomes]
rs61279679	0.86[AFR][1000 genomes]
rs61388941	1.00[AFR][1000 genomes]
rs61627994	0.86[AFR][1000 genomes]
rs7167520	0.89[AFR][1000 genomes]
rs73423648	0.87[AFR][1000 genomes]
rs73423653	0.87[AFR][1000 genomes]
rs73425619	0.83[AFR][1000 genomes]
rs73425629	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv569576	chr15:57012816-57126917	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56971000-57023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:56992400-57021800	Weak transcription	Right Ventricle	heart
3	chr15:56992600-57022600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:56993000-57024000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:56993400-57021600	Weak transcription	Fetal Brain Male	brain
6	chr15:56994000-57023800	Weak transcription	Fetal Kidney	kidney
7	chr15:56995800-57022200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr15:56996000-57021800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr15:56996400-57021600	Weak transcription	HSMMtube	muscle
10	chr15:56996400-57022600	Weak transcription	NH-A	brain
11	chr15:56996800-57022600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:56997200-57022800	Weak transcription	Gastric	stomach
13	chr15:56997200-57023800	Weak transcription	Fetal Stomach	stomach
14	chr15:56998400-57021200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:56998800-57021800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr15:56998800-57023400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr15:56998800-57023800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:56999400-57023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:57009200-57021400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:57009400-57022800	Weak transcription	Right Atrium	heart
21	chr15:57009400-57024400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr15:57011000-57022200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:57011200-57022600	Weak transcription	Fetal Heart	heart
24	chr15:57011400-57021200	Weak transcription	Brain Substantia Nigra	brain
25	chr15:57011400-57021400	Weak transcription	Adipose Nuclei	Adipose
26	chr15:57011400-57021800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:57011600-57021000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr15:57011600-57022600	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:57011600-57023400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:57011600-57024400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:57011600-57024400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57011800-57022600	Weak transcription	HMEC	breast
33	chr15:57011800-57024000	Weak transcription	Aorta	Aorta
34	chr15:57012400-57022600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr15:57012400-57022600	Weak transcription	Osteobl	bone
36	chr15:57012400-57025000	Weak transcription	Spleen	Spleen
37	chr15:57012600-57022600	Weak transcription	NHEK	skin
38	chr15:57012600-57023000	Weak transcription	NHLF	lung
39	chr15:57012600-57023400	Weak transcription	Psoas Muscle	Psoas
40	chr15:57013000-57022800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:57013200-57022600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:57013400-57024200	Weak transcription	Ovary	ovary
43	chr15:57014000-57022400	Weak transcription	Brain Germinal Matrix	brain
44	chr15:57014200-57022800	Weak transcription	K562	blood
45	chr15:57015400-57022600	Weak transcription	HUVEC	blood vessel
46	chr15:57016400-57022600	Weak transcription	Stomach Mucosa	stomach
47	chr15:57016600-57022600	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:57016800-57021200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr15:57016800-57021400	Weak transcription	Brain Cingulate Gyrus	brain
50	chr15:57016800-57023400	Weak transcription	Fetal Muscle Trunk	muscle

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