Variant report

Variant	rs73423648
Chromosome Location	chr15:56944556-56944557
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55658557	0.89[AFR][1000 genomes]
rs59016569	0.87[AFR][1000 genomes]
rs61388941	0.87[AFR][1000 genomes]
rs61627994	0.98[AFR][1000 genomes]
rs7167520	0.89[AFR][1000 genomes]
rs7172910	0.89[AFR][1000 genomes]
rs73423653	1.00[AFR][1000 genomes]
rs73425619	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56902800-56945400	Weak transcription	Right Ventricle	heart
2	chr15:56910600-56945400	Weak transcription	HSMMtube	muscle
3	chr15:56912800-56957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr15:56913400-56955200	Weak transcription	Aorta	Aorta
5	chr15:56916600-56990800	Weak transcription	Pancreas	Pancrea
6	chr15:56916800-56949800	Weak transcription	Fetal Kidney	kidney
7	chr15:56917200-56955200	Weak transcription	Psoas Muscle	Psoas
8	chr15:56917600-56944800	Weak transcription	Fetal Brain Male	brain
9	chr15:56917600-56957000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:56917800-56945400	Weak transcription	GM12878-XiMat	blood
11	chr15:56917800-56955800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr15:56917800-56956800	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:56917800-56959800	Weak transcription	Brain Angular Gyrus	brain
14	chr15:56917800-56990600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr15:56917800-56990600	Weak transcription	NHLF	lung
16	chr15:56918000-56945200	Weak transcription	A549	lung
17	chr15:56918000-56945600	Weak transcription	Stomach Smooth Muscle	stomach
18	chr15:56918400-56945400	Weak transcription	Fetal Intestine Small	intestine
19	chr15:56918400-56957200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr15:56919600-56955200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
22	chr15:56920000-56945400	Weak transcription	Fetal Intestine Large	intestine
23	chr15:56920000-56953000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr15:56920400-56945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:56921600-56955200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:56921600-56955400	Weak transcription	NH-A	brain
27	chr15:56922000-56954800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:56922000-56958000	Weak transcription	Lung	lung
29	chr15:56922200-56945400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:56922400-56945400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr15:56922800-56945400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:56924000-56945400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:56924000-56945400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:56924000-56990600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:56924000-56990800	Weak transcription	NHEK	skin
36	chr15:56924200-56944800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr15:56924200-56945400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr15:56924200-56945400	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:56924200-56945400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:56924200-56945400	Weak transcription	Fetal Lung	lung
41	chr15:56924200-56945400	Weak transcription	Left Ventricle	heart
42	chr15:56924200-56949000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr15:56924200-56955400	Weak transcription	Fetal Brain Female	brain
44	chr15:56924600-56945400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:56924600-56957200	Weak transcription	HUVEC	blood vessel
46	chr15:56928400-56996800	Weak transcription	Gastric	stomach
47	chr15:56930000-56945400	Weak transcription	Fetal Muscle Leg	muscle
48	chr15:56930000-56950000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr15:56930000-56954800	Weak transcription	Fetal Stomach	stomach
50	chr15:56930400-56945200	Weak transcription	NHDF-Ad	bronchial

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