Variant report

Variant	rs59045886
Chromosome Location	chr7:69885576-69885577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10486877	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10950200	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11762022	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17488414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17488553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17565895	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17566440	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55981021	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66467375	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66665814	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66973794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs68173070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73175925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175931	1.00[ASN][1000 genomes]
rs73175934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888339	chr7:69879914-69952187	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv888340	chr7:69879914-69959059	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69871800-69908000	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:69875600-69903600	Weak transcription	Spleen	Spleen
3	chr7:69880000-69888000	Enhancers	Fetal Brain Male	brain
4	chr7:69881400-69887400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr7:69882800-69886200	Weak transcription	Fetal Stomach	stomach
6	chr7:69882800-69886600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:69883000-69886400	Weak transcription	Brain Substantia Nigra	brain
8	chr7:69883200-69886600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:69883400-69886400	Weak transcription	Brain Angular Gyrus	brain
10	chr7:69883400-69886400	Weak transcription	Brain Anterior Caudate	brain
11	chr7:69883800-69885600	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:69884200-69887000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:69884400-69887200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:69884600-69886600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:69884600-69887200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:69884600-69887200	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:69884600-69887400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr7:69884800-69887000	Enhancers	Fetal Brain Female	brain
19	chr7:69884800-69887200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr7:69884800-69887400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr7:69885000-69886800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr7:69885200-69887200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:69885400-69886600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:69885400-69886800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:69885400-69887200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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