Variant report

Variant	rs66467375
Chromosome Location	chr7:69881518-69881519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10486877	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10950200	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11762022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17488414	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17488553	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17565895	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17566440	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55981021	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59045886	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66665814	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66973794	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68173070	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73175925	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73175934	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv869342	chr7:69671501-69958576	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv888337	chr7:69707076-69952187	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv529669	chr7:69709373-69974708	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1029586	chr7:69817143-69978454	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538927	chr7:69817143-69978454	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv888338	chr7:69860713-69952187	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv888339	chr7:69879914-69952187	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv888340	chr7:69879914-69959059	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69871800-69908000	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:69872000-69882000	Weak transcription	Fetal Lung	lung
3	chr7:69872200-69881800	Weak transcription	Fetal Stomach	stomach
4	chr7:69875000-69883800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:69875600-69903600	Weak transcription	Spleen	Spleen
6	chr7:69877200-69884400	Weak transcription	Right Atrium	heart
7	chr7:69877400-69882600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:69878600-69881600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:69879600-69882200	Enhancers	Primary B cells from peripheral blood	blood
10	chr7:69880000-69882200	Enhancers	Primary B cells from cord blood	blood
11	chr7:69880000-69888000	Enhancers	Fetal Brain Male	brain
12	chr7:69880600-69881800	Enhancers	Fetal Brain Female	brain
13	chr7:69880600-69882200	Enhancers	Fetal Thymus	thymus
14	chr7:69880800-69883800	Weak transcription	Gastric	stomach
15	chr7:69881000-69882200	Enhancers	Brain Germinal Matrix	brain
16	chr7:69881400-69881600	Enhancers	Brain Cingulate Gyrus	brain
17	chr7:69881400-69881600	Flanking Active TSS	GM12878-XiMat	blood
18	chr7:69881400-69882200	Enhancers	Brain Angular Gyrus	brain
19	chr7:69881400-69882400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
20	chr7:69881400-69882800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr7:69881400-69882800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr7:69881400-69883000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr7:69881400-69883400	Enhancers	Brain Anterior Caudate	brain
24	chr7:69881400-69883600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:69881400-69887400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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