Variant report

Variant	rs59050103
Chromosome Location	chr20:23276895-23276896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16985047	1.00[AMR][1000 genomes]
rs60582540	1.00[AMR][1000 genomes]
rs6137849	1.00[AMR][1000 genomes]
rs7274708	1.00[AMR][1000 genomes]
rs73901932	1.00[AMR][1000 genomes]
rs73901939	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23269200-23277200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:23271200-23277000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:23272400-23277000	Weak transcription	NHDF-Ad	bronchial
4	chr20:23272800-23277400	Weak transcription	Fetal Muscle Leg	muscle
5	chr20:23274800-23277200	Weak transcription	Fetal Lung	lung
6	chr20:23275000-23277400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr20:23275600-23277800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr20:23275600-23285200	Weak transcription	Spleen	Spleen
9	chr20:23275800-23281800	Weak transcription	Right Atrium	heart
10	chr20:23276400-23277400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr20:23276600-23279000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:23276800-23277000	Enhancers	Duodenum Mucosa	Duodenum
13	chr20:23276800-23278600	Enhancers	Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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