Variant report

Variant	rs60582540
Chromosome Location	chr20:23280513-23280514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16985047	1.00[AMR][1000 genomes]
rs59050103	1.00[AMR][1000 genomes]
rs6137849	1.00[AMR][1000 genomes]
rs7274708	1.00[AMR][1000 genomes]
rs73901932	1.00[AMR][1000 genomes]
rs73901939	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23275600-23285200	Weak transcription	Spleen	Spleen
2	chr20:23275800-23281800	Weak transcription	Right Atrium	heart
3	chr20:23279800-23284000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr20:23280000-23280600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr20:23280000-23291000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:23280400-23284200	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links