Variant report

Variant	rs59056946
Chromosome Location	chr8:35574105-35574106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55939700	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs55949471	0.85[AMR][1000 genomes]
rs56114419	0.83[AFR][1000 genomes]
rs56131202	0.85[AMR][1000 genomes]
rs56298617	0.85[AMR][1000 genomes]
rs56385636	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57959385	0.85[AMR][1000 genomes]
rs58638685	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59087360	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59352631	0.85[AMR][1000 genomes]
rs60148169	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60257165	0.86[AFR][1000 genomes]
rs60855337	0.86[AFR][1000 genomes]
rs61113233	0.83[AFR][1000 genomes]
rs61506285	0.85[AMR][1000 genomes]
rs73583031	0.85[AMR][1000 genomes]
rs73583060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584827	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73584829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73584830	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73584868	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73584872	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73584880	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73586705	0.83[AFR][1000 genomes]
rs73586719	0.83[AFR][1000 genomes]
rs73671916	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv831285	chr8:35485874-35648117	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2754662	chr8:35558658-35648958	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1032540	chr8:35565491-35949132	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35531000-35579600	Weak transcription	Fetal Brain Female	brain
2	chr8:35538000-35575200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:35547400-35579800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:35565400-35576200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:35570400-35575200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:35570400-35575200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:35573400-35576600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr8:35573400-35577000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:35573400-35577000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:35573400-35577800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:35573600-35574600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr8:35573600-35577200	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:35573800-35577000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:35573800-35577000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:35573800-35578000	Enhancers	HUES48 Cell Line	embryonic stem cell

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