Variant report

Variant	rs59058794
Chromosome Location	chr14:79662819-79662820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10130794	1.00[AMR][1000 genomes]
rs10131285	1.00[AMR][1000 genomes]
rs10137034	1.00[AMR][1000 genomes]
rs10141967	1.00[AMR][1000 genomes]
rs10149302	1.00[AMR][1000 genomes]
rs10150122	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150906	1.00[AMR][1000 genomes]
rs13379188	1.00[AMR][1000 genomes]
rs13379304	1.00[AMR][1000 genomes]
rs28376793	1.00[AMR][1000 genomes]
rs28450317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547245	1.00[AMR][1000 genomes]
rs4609770	1.00[AMR][1000 genomes]
rs60958288	1.00[AMR][1000 genomes]
rs7142699	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322876	1.00[AMR][1000 genomes]
rs73322893	1.00[AMR][1000 genomes]
rs73324705	1.00[AMR][1000 genomes]
rs73324740	1.00[AMR][1000 genomes]
rs73324748	1.00[AMR][1000 genomes]
rs73325827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv827002	chr14:79654898-79665722	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
5	esv2757579	chr14:79658731-79665685	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
6	esv2760001	chr14:79658731-79665685	Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79662400-79664200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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