Variant report

Variant	rs28376793
Chromosome Location	chr14:79558389-79558390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10130794	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131285	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137034	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10140005	0.83[AFR][1000 genomes]
rs10141967	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144702	0.85[AFR][1000 genomes]
rs10149302	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150122	1.00[AMR][1000 genomes]
rs10150906	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379131	0.89[AFR][1000 genomes]
rs13379188	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13379304	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450317	1.00[AMR][1000 genomes]
rs28547245	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667554	0.83[AFR][1000 genomes]
rs28673990	0.87[AFR][1000 genomes]
rs4609770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59058794	1.00[AMR][1000 genomes]
rs60147420	0.91[AFR][1000 genomes]
rs60958288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7142699	1.00[AMR][1000 genomes]
rs73316615	0.83[AFR][1000 genomes]
rs73316627	0.85[AFR][1000 genomes]
rs73320815	0.89[AFR][1000 genomes]
rs73322876	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322893	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324730	1.00[AFR][1000 genomes]
rs73324740	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73324748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73325827	1.00[AMR][1000 genomes]
rs8014991	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2761846	chr14:79522198-79629157	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79556800-79558800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr14:79556800-79559000	Enhancers	Brain Substantia Nigra	brain
3	chr14:79557400-79558600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:79557600-79558400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr14:79557600-79559200	Weak transcription	Colon Smooth Muscle	Colon
6	chr14:79558200-79559800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr14:79558200-79560400	Weak transcription	Brain Angular Gyrus	brain

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