Variant report

Variant	rs59060370
Chromosome Location	chr8:95318225-95318226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95316691..95319286-chr8:95322328..95324198,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4735283	0.80[AMR][1000 genomes]
rs56004352	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95316200-95319400	Weak transcription	A549	lung
2	chr8:95316400-95320000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:95316400-95321000	Weak transcription	HSMM	muscle
4	chr8:95316400-95321600	Weak transcription	Adipose Nuclei	Adipose
5	chr8:95316600-95319400	Weak transcription	NH-A	brain
6	chr8:95316600-95319600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:95316600-95322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:95316800-95319000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:95316800-95319000	Weak transcription	Colon Smooth Muscle	Colon
10	chr8:95316800-95319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr8:95316800-95319400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:95316800-95319400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:95316800-95319400	Weak transcription	Osteobl	bone
14	chr8:95316800-95319600	Weak transcription	NHLF	lung
15	chr8:95316800-95322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:95317000-95319000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:95317000-95319200	Weak transcription	NHDF-Ad	bronchial
18	chr8:95317000-95322400	Weak transcription	HMEC	breast
19	chr8:95317600-95318800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr8:95318000-95321600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links