Variant report

Variant	rs4735283
Chromosome Location	chr8:95320872-95320873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10504937	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12541176	0.92[EUR][1000 genomes]
rs16916769	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16916798	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2028429	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs2046663	1.00[JPT][hapmap]
rs2381828	1.00[JPT][hapmap]
rs3136403	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs3136405	1.00[JPT][hapmap]
rs3136408	1.00[JPT][hapmap]
rs3136409	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4734277	0.84[EUR][1000 genomes]
rs4735290	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs55989726	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58866206	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59060370	0.80[AMR][1000 genomes]
rs59111232	0.82[EUR][1000 genomes]
rs59273159	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59468162	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60425434	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7001164	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73270109	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73270139	0.92[EUR][1000 genomes]
rs73270196	0.84[EUR][1000 genomes]
rs73271915	0.92[EUR][1000 genomes]
rs73695185	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7817230	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs7842883	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95316400-95321000	Weak transcription	HSMM	muscle
2	chr8:95316400-95321600	Weak transcription	Adipose Nuclei	Adipose
3	chr8:95316600-95322200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:95316800-95322600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:95317000-95322400	Weak transcription	HMEC	breast
6	chr8:95318000-95321600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:95318800-95324400	Enhancers	Rectal Smooth Muscle	rectum
8	chr8:95319000-95322000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:95320200-95321200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:95320200-95321200	Weak transcription	Osteobl	bone
11	chr8:95320200-95321400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:95320200-95321400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:95320200-95321400	Weak transcription	NH-A	brain
14	chr8:95320200-95322200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:95320200-95323000	Weak transcription	NHLF	lung
16	chr8:95320200-95323200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:95320400-95321600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:95320400-95323000	Weak transcription	HSMMtube	muscle
19	chr8:95320600-95321000	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:95320600-95321000	Weak transcription	NHDF-Ad	bronchial
21	chr8:95320600-95323600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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