Variant report

Variant	rs59111232
Chromosome Location	chr8:95413497-95413498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10504937	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12541176	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12548615	0.84[AFR][1000 genomes]
rs16916769	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs16916798	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2890804	0.82[AFR][1000 genomes]
rs3136408	0.87[AFR][1000 genomes]
rs3136409	0.87[AFR][1000 genomes]
rs4734277	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4735283	0.82[EUR][1000 genomes]
rs4735290	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs55989726	0.92[EUR][1000 genomes]
rs56272303	0.85[AFR][1000 genomes]
rs58866206	0.92[EUR][1000 genomes]
rs59273159	0.92[EUR][1000 genomes]
rs59468162	0.92[EUR][1000 genomes]
rs60425434	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61410835	0.80[AFR][1000 genomes]
rs6991270	0.81[AFR][1000 genomes]
rs6991746	0.85[AFR][1000 genomes]
rs7001164	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73270109	0.92[EUR][1000 genomes]
rs73270139	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73270196	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73271915	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs73695185	0.92[EUR][1000 genomes]
rs7817230	0.97[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7842883	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1031480	chr8:95375696-95447407	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95365800-95417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:95372000-95414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:95378200-95417200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:95382400-95414800	Weak transcription	Gastric	stomach
5	chr8:95384200-95413600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:95386000-95421400	Weak transcription	Psoas Muscle	Psoas
7	chr8:95386000-95429200	Weak transcription	NHDF-Ad	bronchial
8	chr8:95386600-95418400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr8:95387200-95418000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr8:95389200-95415600	Weak transcription	Adipose Nuclei	Adipose
11	chr8:95389200-95417800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:95392000-95413600	Weak transcription	Left Ventricle	heart
13	chr8:95392200-95414400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:95392200-95415000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr8:95392200-95419000	Weak transcription	Thymus	Thymus
16	chr8:95392200-95421000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:95392200-95430200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:95392400-95413600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:95392400-95416000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr8:95392400-95417400	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:95392600-95414200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:95392600-95415800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:95392600-95417400	Weak transcription	Osteobl	bone
24	chr8:95392600-95424800	Weak transcription	Hela-S3	cervix
25	chr8:95393000-95416000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:95393000-95418000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:95393200-95447000	Weak transcription	K562	blood
28	chr8:95400200-95420200	Weak transcription	Stomach Mucosa	stomach
29	chr8:95400400-95419600	Weak transcription	Fetal Intestine Small	intestine
30	chr8:95400600-95416400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr8:95401400-95419400	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:95402800-95417000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr8:95404000-95416600	Weak transcription	Brain Germinal Matrix	brain
34	chr8:95404000-95418400	Weak transcription	NH-A	brain
35	chr8:95404200-95416400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr8:95404200-95429600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr8:95404400-95419800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr8:95404600-95424400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr8:95405800-95413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:95406400-95416200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:95407800-95418800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr8:95408200-95416000	Weak transcription	HSMM	muscle
43	chr8:95408400-95416200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr8:95408600-95429000	Weak transcription	HMEC	breast
45	chr8:95409400-95415800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr8:95409400-95417600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr8:95409400-95421600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr8:95409400-95443000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr8:95409800-95414600	Weak transcription	A549	lung
50	chr8:95410600-95417200	Strong transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links