Variant report

Variant	rs60425434
Chromosome Location	chr8:95359316-95359317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10504937	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541117	1.00[ASN][1000 genomes]
rs12541176	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542622	1.00[ASN][1000 genomes]
rs12542942	1.00[ASN][1000 genomes]
rs12548615	1.00[ASN][1000 genomes]
rs16916769	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16916798	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028429	1.00[ASN][1000 genomes]
rs2046663	1.00[ASN][1000 genomes]
rs2381828	1.00[ASN][1000 genomes]
rs28398457	1.00[ASN][1000 genomes]
rs28595703	1.00[ASN][1000 genomes]
rs28703913	1.00[ASN][1000 genomes]
rs2890804	1.00[ASN][1000 genomes]
rs3136403	1.00[ASN][1000 genomes]
rs3136405	1.00[ASN][1000 genomes]
rs3136408	1.00[ASN][1000 genomes]
rs3136409	1.00[ASN][1000 genomes]
rs34019009	0.91[ASN][1000 genomes]
rs4734277	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735283	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4735290	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55989726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272303	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57108375	0.85[ASN][1000 genomes]
rs58866206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59111232	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs59233901	1.00[ASN][1000 genomes]
rs59273159	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59468162	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60523486	1.00[ASN][1000 genomes]
rs60654408	1.00[ASN][1000 genomes]
rs60894328	1.00[ASN][1000 genomes]
rs61410835	1.00[ASN][1000 genomes]
rs6991270	1.00[ASN][1000 genomes]
rs6991551	1.00[ASN][1000 genomes]
rs6991746	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7001164	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270109	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270139	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270196	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271911	1.00[ASN][1000 genomes]
rs73271915	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271953	1.00[ASN][1000 genomes]
rs73271959	1.00[ASN][1000 genomes]
rs73271964	1.00[ASN][1000 genomes]
rs73271995	1.00[ASN][1000 genomes]
rs73695185	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817230	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824591	1.00[ASN][1000 genomes]
rs7829493	1.00[ASN][1000 genomes]
rs7836446	1.00[ASN][1000 genomes]
rs7842883	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845278	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95355800-95365200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:95355800-95365400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:95358600-95359800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:95358800-95359400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:95358800-95359400	Enhancers	Fetal Intestine Small	intestine
6	chr8:95358800-95359400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:95358800-95359600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:95358800-95359600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr8:95358800-95359600	Enhancers	Fetal Intestine Large	intestine
10	chr8:95359000-95359400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:95359000-95359400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr8:95359000-95359400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:95359000-95359600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:95359000-95359800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:95359000-95359800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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