Variant report

Variant	rs16916769
Chromosome Location	chr8:95371789-95371790
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:95365546..95367496-chr8:95371194..95372860,2	MCF-7	breast:
2	chr8:95322441..95324940-chr8:95370340..95371975,2	MCF-7	breast:
3	chr8:95370171..95372386-chr8:95374726..95376364,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10504937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541117	1.00[ASN][1000 genomes]
rs12541176	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12542622	1.00[ASN][1000 genomes]
rs12542942	1.00[ASN][1000 genomes]
rs12548615	1.00[ASN][1000 genomes]
rs16916798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2046663	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2381828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs28398457	1.00[ASN][1000 genomes]
rs28595703	1.00[ASN][1000 genomes]
rs28703913	1.00[ASN][1000 genomes]
rs2890804	1.00[ASN][1000 genomes]
rs3136403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3136405	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3136408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3136409	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34019009	0.91[ASN][1000 genomes]
rs4734277	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4735283	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4735290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55989726	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56272303	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57108375	0.85[ASN][1000 genomes]
rs58866206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59111232	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs59233901	1.00[ASN][1000 genomes]
rs59273159	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59468162	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60425434	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60523486	1.00[ASN][1000 genomes]
rs60654408	1.00[ASN][1000 genomes]
rs60894328	1.00[ASN][1000 genomes]
rs61410835	1.00[ASN][1000 genomes]
rs6991270	1.00[ASN][1000 genomes]
rs6991551	1.00[ASN][1000 genomes]
rs6991746	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7001164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270109	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270139	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270196	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271911	1.00[ASN][1000 genomes]
rs73271915	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73271953	1.00[ASN][1000 genomes]
rs73271959	1.00[ASN][1000 genomes]
rs73271964	1.00[ASN][1000 genomes]
rs73271995	1.00[ASN][1000 genomes]
rs73695185	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7824591	1.00[ASN][1000 genomes]
rs7829493	1.00[ASN][1000 genomes]
rs7836446	1.00[ASN][1000 genomes]
rs7842883	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7845278	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95363000-95385200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:95365800-95378800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:95365800-95385000	Weak transcription	NHEK	skin
4	chr8:95365800-95417200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:95366000-95372400	Weak transcription	Fetal Intestine Small	intestine
6	chr8:95366000-95375600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:95369400-95383600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:95370000-95371800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:95370000-95371800	Weak transcription	NHDF-Ad	bronchial
10	chr8:95370000-95372200	Weak transcription	Fetal Intestine Large	intestine
11	chr8:95370000-95379000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:95370000-95380600	Weak transcription	A549	lung
13	chr8:95370000-95382200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr8:95370000-95385000	Weak transcription	NHLF	lung
15	chr8:95370000-95385200	Weak transcription	HSMM	muscle
16	chr8:95370000-95385200	Weak transcription	HUVEC	blood vessel
17	chr8:95370200-95372600	Weak transcription	Fetal Heart	heart
18	chr8:95370200-95378800	Weak transcription	NH-A	brain
19	chr8:95370200-95379000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:95370200-95384800	Weak transcription	HMEC	breast
21	chr8:95370400-95378800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:95370600-95371800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr8:95370600-95381800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr8:95370600-95385400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr8:95370800-95383400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:95371200-95372800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:95371400-95372000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr8:95371400-95372800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:95371600-95372400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr8:95371600-95372400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr8:95371600-95372600	Enhancers	Osteobl	bone
32	chr8:95371600-95372800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:95371600-95374400	Enhancers	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links