Variant report

Variant	rs59273159
Chromosome Location	chr8:95329918-95329919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10504937	1.00[EUR][1000 genomes]
rs12541176	1.00[EUR][1000 genomes]
rs16916769	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16916798	1.00[EUR][1000 genomes]
rs4734277	0.92[EUR][1000 genomes]
rs4735283	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4735290	1.00[EUR][1000 genomes]
rs55989726	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58866206	1.00[EUR][1000 genomes]
rs59111232	0.92[EUR][1000 genomes]
rs59468162	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60425434	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7001164	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270109	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270139	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73270196	0.92[EUR][1000 genomes]
rs73271915	1.00[EUR][1000 genomes]
rs73695185	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7817230	1.00[EUR][1000 genomes]
rs7842883	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831401	chr8:95218297-95393968	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
5	esv3479650	chr8:95329542-95330072	Weak transcription	n/a	n/a	inside rSNPs	n/a
6	esv3323721	chr8:95329590-95330057	Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3479649	chr8:95329604-95330132	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3479648	chr8:95329609-95330021	Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3479651	chr8:95329662-95329986	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95324400-95331800	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:95328600-95338400	Weak transcription	Aorta	Aorta

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