Variant report

Variant	rs59086590
Chromosome Location	chr13:50498925-50498926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12584122	0.84[EUR][1000 genomes]
rs12585966	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1807033	0.81[EUR][1000 genomes]
rs2181267	0.81[EUR][1000 genomes]
rs2181268	0.81[EUR][1000 genomes]
rs41308548	0.82[EUR][1000 genomes]
rs55869555	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60574696	0.84[EUR][1000 genomes]
rs61960398	0.84[EUR][1000 genomes]
rs61960446	0.81[EUR][1000 genomes]
rs61960449	0.81[EUR][1000 genomes]
rs61960450	0.81[EUR][1000 genomes]
rs7328892	0.81[EUR][1000 genomes]
rs74078717	0.81[EUR][1000 genomes]
rs7995557	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs59086590	DLEU1	Cis_1M	lymphoblastoid	RTeQTL
rs59086590	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr13:50479600-50508600	Weak transcription	K562	blood
3	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
4	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain
5	chr13:50481800-50509600	Weak transcription	Right Ventricle	heart
6	chr13:50482600-50509600	Weak transcription	Primary B cells from cord blood	blood
7	chr13:50484000-50509600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:50484400-50501800	Weak transcription	HSMMtube	muscle
9	chr13:50484400-50509400	Weak transcription	Fetal Kidney	kidney
10	chr13:50484600-50509600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr13:50485000-50499400	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr13:50485800-50501800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:50485800-50506200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:50485800-50509200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr13:50486000-50503400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:50486000-50503400	Strong transcription	Liver	Liver
17	chr13:50486000-50509400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr13:50486400-50509600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr13:50486600-50508800	Weak transcription	Hela-S3	cervix
20	chr13:50487400-50509400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr13:50487600-50509400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr13:50488000-50500400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr13:50488400-50509600	Weak transcription	Colonic Mucosa	Colon
24	chr13:50489200-50509600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:50489200-50510000	Weak transcription	Spleen	Spleen
26	chr13:50489600-50501000	Strong transcription	Osteobl	bone
27	chr13:50489600-50502400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:50489600-50503200	Strong transcription	Adipose Nuclei	Adipose
29	chr13:50489600-50504200	Strong transcription	Fetal Intestine Large	intestine
30	chr13:50490000-50499400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr13:50490000-50501400	Weak transcription	Fetal Thymus	thymus
32	chr13:50490200-50502800	Strong transcription	Duodenum Mucosa	Duodenum
33	chr13:50490200-50503000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr13:50490600-50499600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr13:50490800-50502000	Weak transcription	Primary T cells from cord blood	blood
36	chr13:50490800-50506200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr13:50491200-50507000	Weak transcription	Brain Angular Gyrus	brain
38	chr13:50491800-50501200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:50492200-50504600	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr13:50492200-50509400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr13:50492400-50509600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr13:50492600-50508800	Weak transcription	HUVEC	blood vessel
43	chr13:50492800-50509400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr13:50492800-50509600	Weak transcription	Aorta	Aorta
45	chr13:50493400-50502000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:50493400-50509400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr13:50493600-50500000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:50493800-50509600	Weak transcription	Lung	lung
49	chr13:50494000-50502800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr13:50494200-50508800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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