Variant report

Variant	rs61960398
Chromosome Location	chr13:50481158-50481159
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1063181	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1063183	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100038	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12583615	0.81[EUR][1000 genomes]
rs12583637	0.81[EUR][1000 genomes]
rs12583652	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12583823	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12584122	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12585966	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17073655	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17073682	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1807033	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2066540	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2066546	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2066547	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2066552	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2066553	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2066555	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2066559	0.83[AFR][1000 genomes]
rs2066562	0.83[AFR][1000 genomes]
rs2066565	0.83[AFR][1000 genomes]
rs2177313	0.85[AFR][1000 genomes]
rs2181267	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2181268	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2407881	0.81[EUR][1000 genomes]
rs2407882	0.86[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs41308548	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4614628	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638467	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55727821	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55869555	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57230741	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59086590	0.84[EUR][1000 genomes]
rs59931782	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60574696	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60583460	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs60828549	0.85[AFR][1000 genomes]
rs61960442	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61960445	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61960446	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61960447	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61960449	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61960450	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61960451	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61960454	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61960455	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61960457	0.83[EUR][1000 genomes]
rs61961261	0.83[EUR][1000 genomes]
rs61961263	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61961294	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61961298	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61961299	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61961302	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61961306	0.83[AFR][1000 genomes]
rs61961324	0.85[AFR][1000 genomes]
rs6561571	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6561572	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs66559968	0.82[AFR][1000 genomes]
rs66756338	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7319351	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73194486	0.95[ASN][1000 genomes]
rs73196708	0.90[ASN][1000 genomes]
rs73196731	0.81[EUR][1000 genomes]
rs732729	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7328892	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7334063	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7336477	0.89[EUR][1000 genomes]
rs7336927	0.82[AFR][1000 genomes]
rs7339181	0.82[AFR][1000 genomes]
rs74078717	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7984332	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7984907	0.83[AFR][1000 genomes]
rs7986364	0.85[AFR][1000 genomes]
rs7986432	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7990502	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7991454	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7992903	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7994224	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7995557	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7997305	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7997402	0.83[EUR][1000 genomes]
rs7997638	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7998223	0.85[AFR][1000 genomes]
rs7998391	0.81[EUR][1000 genomes]
rs9670083	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851738	chr13:50474326-50507944	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs61960398	TRIM13	cis	Nerve Tibial	GTEx
rs61960398	DLEU1	Cis_1M	lymphoblastoid	RTeQTL
rs61960398	TRIM13	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50468600-50486000	Weak transcription	Liver	Liver
2	chr13:50476400-50497400	Weak transcription	Pancreas	Pancrea
3	chr13:50477800-50499600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr13:50478000-50487200	Weak transcription	Ovary	ovary
5	chr13:50478000-50495200	Weak transcription	Brain Hippocampus Middle	brain
6	chr13:50478600-50491400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:50479200-50489600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr13:50479400-50482200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:50479400-50490600	Weak transcription	Esophagus	oesophagus
10	chr13:50479600-50508600	Weak transcription	K562	blood
11	chr13:50479800-50500000	Weak transcription	Colon Smooth Muscle	Colon
12	chr13:50480800-50508800	Weak transcription	Fetal Brain Male	brain

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